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ath1 microarrays  (Thermo Fisher)


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    Structured Review

    Thermo Fisher ath1 microarrays
    Ath1 Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+microarrays/pmc11696002-150-15-15
    Average 90 stars, based on 1 article reviews
    ath1 microarrays - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Arabidopsis ubiquitin ligase PUB41 is a positive regulator of the ABA response
    Article Snippet: .. Only limited expression data for At PUB41 is available as the AT5G62560 locus was not included in the Affymetrix ATH1 microarrays. ..

    Article Title: Arabidopsis ubiquitin ligase PUB41 positively regulates ABA-mediated seed dormancy and drought response.
    Article Snippet: .. Only limited expression data for AtPUB41 is available as the AT5G62560 locus was not included in the Affymetrix ATH1 microarrays. ..

    Article Title: Functional Dissection of Sugar Signals Affecting Gene Expression in Arabidopsis thaliana
    Article Snippet: .. To identify genes rapidly responding to low concentrations of specific sugars, expression analyses using the Affymetrix ATH1 microarrays were performed on Xyl-based cell-culture samples treated for 1 h with 1 mM of either Glc, Fru, Suc or Xyl in 3 independent replicates for each treatment. ..

    Labeling:

    Article Title: GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences
    Article Snippet: .. The mRNA labeling, hybridization, and scanning of Affymetrix ATH1 microarrays were done by the CGRB core facility at OSU. ..

    Hybridization:

    Article Title: GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences
    Article Snippet: .. The mRNA labeling, hybridization, and scanning of Affymetrix ATH1 microarrays were done by the CGRB core facility at OSU. ..

    Gene Expression:

    Article Title: Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
    Article Snippet: .. This study was based on gene expression data generated with Affymetrix ATH1 microarrays (Affymetrix, San Diego, CA, USA) [ ] during various experiments, all of which are publicly available from the Nottingham Arabidopsis Stock Centre (NASC) [ , ]. ..

    Generated:

    Article Title: Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
    Article Snippet: .. This study was based on gene expression data generated with Affymetrix ATH1 microarrays (Affymetrix, San Diego, CA, USA) [ ] during various experiments, all of which are publicly available from the Nottingham Arabidopsis Stock Centre (NASC) [ , ]. ..

    Article Title: Regulation of meristem and hormone function revealed through analysis of directly-regulated SHOOT MERISTEMLESS target genes
    Article Snippet: .. Moreover, identification of transcriptionally responsive genes was done using a rather limited dataset generated using Affymetrix ATH1 microarrays, which does not contain probe-sets for all transcripts from the Arabidopsis genome. ..

    Mutagenesis:

    Article Title: A Non-Canonical Function of Arabidopsis ERECTA Proteins in Gibberellin Signaling
    Article Snippet: .. Given the severe phenotypic alterations of the er/erl1/erl2 plants, we performed transcript profiling with Affymetrix ATH1 microarrays on RNA samples from aerial parts of the er/erl1/erl2 mutant and WT (wild type) adult plants (representing the most comparable stage of the development) grown for 5 weeks under long-day conditions (16h day/8h night). ..



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    Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix <t>Arabidopsis</t> <t>ATH1</t> chip. The average normalized intensity for each <t>microarray</t> chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.
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    Thermo Fisher ath1 genechip microarrays
    Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix <t>Arabidopsis</t> <t>ATH1</t> chip. The average normalized intensity for each <t>microarray</t> chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.
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    Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix Arabidopsis ATH1 chip. The average normalized intensity for each microarray chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.

    Journal: International Journal of Molecular Sciences

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle

    doi: 10.3390/ijms251910850

    Figure Lengend Snippet: Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix Arabidopsis ATH1 chip. The average normalized intensity for each microarray chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.

    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Techniques: Expressing, Starch, Activity Assay, Microarray

    Expression correlations among genes within the starch metabolic network. Expression correlations among starch metabolic genes were evaluated by 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG . Pearson correlation values are color-coded. Vertical bars (labeled #1, group 1; #2, group 2; and #3, group 3) denote the three groups of genes with the highest correlations. Group 1 represents genes involved in starch degradation, Group 2 includes genes primarily associated with starch synthesis, and Group 3 comprises genes involved in both starch synthesis and carbohydrate metabolism. Details for each group are described in the text.

    Journal: International Journal of Molecular Sciences

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle

    doi: 10.3390/ijms251910850

    Figure Lengend Snippet: Expression correlations among genes within the starch metabolic network. Expression correlations among starch metabolic genes were evaluated by 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG . Pearson correlation values are color-coded. Vertical bars (labeled #1, group 1; #2, group 2; and #3, group 3) denote the three groups of genes with the highest correlations. Group 1 represents genes involved in starch degradation, Group 2 includes genes primarily associated with starch synthesis, and Group 3 comprises genes involved in both starch synthesis and carbohydrate metabolism. Details for each group are described in the text.

    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Techniques: Expressing, Starch, Microarray, Labeling

    Gene expression correlated with the expression of the DPE2 gene. Gene-expression profiles of nine genes ( PTPKIS1 / SEX4 , GWD1 , ISA3 , GWD3 , ISA2 , PHS2 , PHS1 , AT1G06460, and AT2G31040) correlated to the expression profile of DPE2 (Pearson’s correlation coefficients of between 0.72 and 0.84). Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG ; the average expression level for each chip is 6.6.

    Journal: International Journal of Molecular Sciences

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle

    doi: 10.3390/ijms251910850

    Figure Lengend Snippet: Gene expression correlated with the expression of the DPE2 gene. Gene-expression profiles of nine genes ( PTPKIS1 / SEX4 , GWD1 , ISA3 , GWD3 , ISA2 , PHS2 , PHS1 , AT1G06460, and AT2G31040) correlated to the expression profile of DPE2 (Pearson’s correlation coefficients of between 0.72 and 0.84). Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG ; the average expression level for each chip is 6.6.

    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Techniques: Expressing, Microarray